Package: grayleafspotr
Title: Quantitative Analysis of Gray Leaf Spot Colonies from Plate
        Images
Version: 0.99.14
Authors@R: person(
  given = "Rohan",
  family = "R",
  email = "phonics-tiffs1i@icloud.com",
  role = c("aut", "cre", "cph"),
  comment = c(ORCID = "0009-0005-9225-1775")
 )
Description: Quantitative phenotyping of gray leaf spot (Magnaporthe
        oryzae) fungal colonies grown on petri dishes. The package
        segments colonies from time-lapse plate photographs using a
        bundled SmallUNet deep-learning model, extracts morphometric
        and texture features (area, eccentricity, crack coverage,
        radial profile), and provides tidy result objects together with
        template ggplot2 visualisations. Python dependencies are
        managed automatically through basilisk; no manual environment
        setup is required.
License: Apache License (>= 2.0) | file LICENSE
URL: https://rotsl.github.io/grayleafspotr,
        https://github.com/rotsl/grayleafspotr
BugReports: https://github.com/rotsl/grayleafspotr/issues
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Depends: R (>= 4.6.0)
Imports: basilisk, reticulate, dplyr, ggplot2, jsonlite, readr, tibble,
        png, BiocFileCache, EBImage, stats
biocViews: Software, Preprocessing, Visualization, Classification,
        FeatureExtraction
Suggests: knitr, rmarkdown, pkgdown, magick, jpeg, tiff, testthat (>=
        3.0.0), BiocStyle
Config/testthat/edition: 3
VignetteBuilder: knitr
Config/roxygen2/version: 8.1.0
Config/pak/sysreqs: cmake libfftw3-dev make libicu-dev libjpeg-dev
        libpng-dev libtiff-dev libuv1-dev libssl-dev python3 libx11-dev
Repository: https://rotsl.r-universe.dev
Date/Publication: 2026-10-10 23:45:31 UTC
RemoteUrl: https://github.com/rotsl/grayleafspotr
RemoteRef: HEAD
RemoteSha: 30793d6e60427d8db8a393bd88d16993c6602c12
NeedsCompilation: no
Packaged: 2026-10-11 00:12:07 UTC; root
Author: Rohan R [aut, cre, cph] (ORCID:
    <https://orcid.org/0009-0005-9225-1775>)
Maintainer: Rohan R <phonics-tiffs1i@icloud.com>