What is grayleafspotr? | Quick start with bundled data | View the feature table | Template plots | Convert to a plain data frame | Analyze your own images | Visualize detected regions of interest | Reload saved results | Next steps | Session information

Abstract | Interoperability with Bioconductor | Package overview | What the package does | Input requirements | Workflow at a glance | Installation | Bundled example data | Load the example run | Inspect the feature table | Locate bundled source images | Template visualisations | Colony expansion over time | Growth rate and edge roughness | Crack coverage and count | Texture organisation | Shape versus stress | Feature correlation heatmap | Radial intensity profile | Work with tidy data | Custom plot | Analyze your own images | Prepare your image folder | Run the analysis: simple entry point | Full-featured alternative: grayleafspot_analyze() | Visual QC: overlay detected ROIs on the source image | Reload saved results | Developer note: Python override | References | Session information

What is grayleafspotr? | Quick start with bundled data | View the feature table | Template plots | Convert to a plain data frame | Analyze your own images | Visualize detected regions of interest | Reload saved results | Next steps | Session information

Abstract | Interoperability with Bioconductor | Package overview | What the package does | Input requirements | Workflow at a glance | Installation | Bundled example data | Load the example run | Inspect the feature table | Locate bundled source images | Template visualisations | Colony expansion over time | Growth rate and edge roughness | Crack coverage and count | Texture organisation | Shape versus stress | Feature correlation heatmap | Radial intensity profile | Work with tidy data | Custom plot | Analyze your own images | Prepare your image folder | Run the analysis: simple entry point | Full-featured alternative: grayleafspot_analyze() | Visual QC: overlay detected ROIs on the source image | Reload saved results | Developer note: Python override | References | Session information

Background | Generating an alpha design | Repeated controls | Proposing alpha structures | Resolvability | Reference

What EDGAR is | Installing | Listing designs | Generating a design | Reproducibility | Working with the result | Exporting | Provenance

Overview | Quick start in a fresh project | Configuration | Workflows | Reports | GitHub integration | Command line interface