grayleafspotr - Quantitative Analysis of Gray Leaf Spot Colonies from Plate Images
Quantitative phenotyping of gray leaf spot (Cercospora zeae-maydis) fungal colonies grown on petri dishes. The package segments colonies from time-lapse plate photographs using a bundled SmallUNet deep-learning model, extracts morphometric and texture features (area, eccentricity, crack coverage, radial profile), and provides tidy result objects together with template ggplot2 visualisations. Python dependencies are managed automatically through basilisk; no manual environment setup is required.
Last updated
softwarepreprocessingvisualizationclassificationfeatureextraction
3.48 score 7 scripts
grayleafspotr - Quantitative Analysis of Gray Leaf Spot Colonies from Plate Images
Quantitative phenotyping of gray leaf spot (Cercospora zeae-maydis) fungal colonies grown on petri dishes. The package segments colonies from time-lapse plate photographs using a bundled SmallUNet deep-learning model, extracts morphometric and texture features (area, eccentricity, crack coverage, radial profile), and provides tidy result objects together with template ggplot2 visualisations. Python dependencies are managed automatically through basilisk; no manual environment setup is required.
Last updated
softwarepreprocessingvisualizationclassificationfeatureextractionbiological-data-analysisgrayleafspothuggingfaceimage-processingmlpythonsegmentation
3.48 score 1 stars 7 scripts