Package: biotrace 0.1.0

biotrace: R Integration for the BioTrace GitHub Action

Tools for configuring, validating, running and inspecting integrations with the BioTrace GitHub Action, which traces biological results from data and code to figures and scientific claims. The package provides an R API, a command-line interface, GitHub workflow scaffolding, configuration helpers and report readers. It does not ship or execute the upstream TypeScript engine; BioTrace runs only through its published GitHub Action (uses: rotsl/biotrace@v1).

Authors:Rohan R [aut, cre, cph]

biotrace_0.1.0.tar.gz
biotrace_0.1.0.zip(r-4.7-any)biotrace_0.1.0.zip(r-4.6-any)biotrace_0.1.0.zip(r-4.5-any)
biotrace_0.1.0.tgz(r-4.6-any)biotrace_0.1.0.tgz(r-4.5-any)
biotrace_0.1.0.tar.gz(r-4.7-any)biotrace_0.1.0.tar.gz(r-4.6-any)
biotrace_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
biotrace/json (API)

# Install 'biotrace' in R:

install.packages('biotrace', repos = c('https://rotsl.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rotsl/biotrace-r/issues

On CRAN:

bioinformatics biotrace computational-biology computational-biology-datasets github github-actions hpc r-universe scientific-computing workflows

3.00 score 1 stars 7 scripts 12 exports 4 dependencies

Last updated from:ab494e1759. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel	OK	126
source / vignettes	OK	180
linux-release	OK	138
macos-release	OK	179
macos-oldrel	OK	203
windows-devel	OK	62
windows-release	OK	66
windows-oldrel	OK	81
wasm-release	OK	99

Exports:biotrace_version biotrace_workflow_text default_biotrace_config default_biotrace_config_text read_biotrace_config read_biotrace_report run_biotrace_github use_biotrace validate_biotrace_config validate_biotrace_report write_biotrace_config write_biotrace_workflow

Dependencies:fs jsonlite rlang yaml

biotrace: R integration for the BioTrace GitHub Action

Rendered frombiotrace.Rmdusingknitr::rmarkdown

Last update: 2026-08-20
Started: 2026-08-20

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
BioTrace configuration helpers	biotrace_config default_biotrace_config default_biotrace_config_text read_biotrace_config validate_biotrace_config write_biotrace_config
BioTrace report readers	biotrace_report print.biotrace_report read_biotrace_report summary.biotrace_report validate_biotrace_report
Report the package version and the upstream BioTrace reference	biotrace_version
BioTrace workflow scaffolding	biotrace_workflow biotrace_workflow_text use_biotrace write_biotrace_workflow
Trigger or inspect BioTrace via GitHub	run_biotrace_github